Short course on

Statistical surveillance of infectious diseases

held at the Department of Statistics, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil, Nov 27-28, 2008.


Course contents

Public health authorities have, in an attempt to meet the threats of infectious diseases, created comprehensive mechanisms for the
collection of disease data. The vast amounts of data resulting from this acquisition demands the development of algorithms for the automated detection of abnormalities and changes.

This short course covers statistical aspects of how to treat such data when - possibly after some preprocessing - one has univariate
or multivariate time series of case counts. Two aspects are covered: retrospective modelling of surveillance time series and prospective surveillance, where the aim is to quickly determine the onset of health relevant events. Statistical methods and algorithms dealing with such temporal surveillance are introduced and their use is illustrated through the R package 'surveillance'.

The structure of the short course will be as follows:

  1. Motivating examples: Why is there an interest in the automatic monitoring of routine collected public health data.
  2. Overview of temporal surveillance and introduction to the R package 'surveillance'
  3. Specific treatment of Shewhart methods and CUSUM based methods. Among others this includes: The historical limits method, the Farrington et al. (1996) procedure, Rossi et al. (1999), Rogerson & Yamada (2004) and Höhle & Paul (2008).
  4. Comparing surveillance methods: empirical investigations and theoretical considerations
  5. Towards multivariate surveillance - how to extend the known approaches?
  6. Outlook - spatio-temporal epidemic modelling
The intended audience of the course are biostatisticians, epidemiologists and master students of these directions. Prerequisites are a knowledge of statistics up to a basic understanding of Poisson regression models and familiarity with R - a free software environment for statistical computing and graphics.

Speaker: Michael Höhle, Department of Statistics, Ludwig-Maximilians-Universität München, Germany


Practical information

Location: 
Seminar Room 2076, Instituto de Ciências Exatas, UFMG
Dates:
Thursday 27 Nov 2008, from 11:10 to 12:30
Friday 28 Nov 2008: from 11:10 to 12:30 and 13:30 to 15:00


Course material

Reading:
surveillance: An R package for the surveillance of infectious diseases (2007), M. Höhle, Computational Statistics, 22(4), pp. 571–582


Software:

The R Project for Statistical Computing
Link to the R package surveillance


Slides:

Course slides