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RecordingIndexEvents in an array
when one is recieved.- ArrayListener(String[]) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.ArrayListener
-
- ArrayListener(String[], int) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.ArrayListener
-
- ArrayTools - class org.omegahat.GUtilities.ArrayTools.
-
- ArrayTools() -
Constructor for class org.omegahat.GUtilities.ArrayTools
-
- arrayToString() -
Method in class org.omegahat.Simulation.MCMC.ContainerState
-
- arrayToString(Object) -
Method in class org.omegahat.Simulation.MCMC.CustomMetropolisHastingsSampler
-
- arrayToString(Object) -
Method in class org.omegahat.Simulation.MCMC.DetailHastingsCoupledStepEvent
-
- arrayToString(Object) -
Method in class org.omegahat.Simulation.MCMC.Listeners.StepListenerPrinter
-
- arrayToString(Object) -
Static method in class org.omegahat.GUtilities.ArrayTools
-
- arrayToString(Object) -
Static method in class org.omegahat.Simulation.MCMC.Utilities
-
- arrayToString(Object, String, String, String) -
Static method in class org.omegahat.GUtilities.ArrayTools
-
- attr(String) -
Method in class org.omegahat.Simulation.MCMC.MultiState
-
- attr(String, Object) -
Method in class org.omegahat.Simulation.MCMC.MultiState
-
- attributeNames() -
Method in class org.omegahat.Simulation.MCMC.MultiState
-
- attributes -
Variable in class org.omegahat.Simulation.MCMC.MultiState
-
- averageDistance() -
Method in class org.omegahat.Simulation.MCMC.Listeners.DistanceListener
-
MarkovChain
.CustomHastingsCoupledSampler
by allowing boundaries to be set for each
dimension.CustomHastingsCoupledSampler
by allowing boundaries to be set for each
dimension.FullConditionalProposal
to generate the next Markov state.MarkovProposal
to generate the next Markov state.GenericProposal
and UnnormalizedDensity
to generate the next Markov state.GenericChainStepEvent
s at each step
GenericChainStepEvent
s at each step
SymmetricProposal
and
UnnormalizedDensity
to generate the next Markov
state.RecordingStepEvents when one is recieved.- ExpandingPlottingListener(String[]) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.ExpandingPlottingListener
-
- ExpandingPlottingListener(String[], int, int) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.ExpandingPlottingListener
-
- expectedAcceptance() -
Method in class org.omegahat.Simulation.MCMC.Listeners.DistanceListener
-
- expectedDistance() -
Method in class org.omegahat.Simulation.MCMC.Listeners.DistanceListener
-
- exponentialRand() -
Method in class org.omegahat.Probability.Distributions.DistributionFunctions
- Inverse CDF method for generating exponential( 1 ) random number.
- exponentialRand(double) -
Method in class org.omegahat.Probability.Distributions.DistributionFunctions
- Inverse CDF method for generating exponential( beta ) random number.
- ExpressionGeneralProposal - class org.omegahat.Simulation.MCMC.Expressions.ExpressionGeneralProposal.
-
- ExpressionGeneralProposal(MultiLineModelFormula, Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionGeneralProposal
-
- ExpressionGeneralProposal(String[], Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionGeneralProposal
-
- ExpressionGeneralProposal(String, Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionGeneralProposal
-
- ExpressionGibbsSampler - class org.omegahat.Simulation.MCMC.Expressions.ExpressionGibbsSampler.
- ;
A placeholder for a Gibbs Sampler based on a specified model
expression.
- ExpressionGibbsSampler(MultiLineModelFormula, Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionGibbsSampler
-
- ExpressionGibbsSampler(String[], Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionGibbsSampler
-
- ExpressionGibbsSampler(String, Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionGibbsSampler
-
- ExpressionMarkovProposal - class org.omegahat.Simulation.MCMC.Expressions.ExpressionMarkovProposal.
-
- ExpressionMarkovProposal(MultiLineModelFormula, Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionMarkovProposal
-
- ExpressionMarkovProposal(String[], Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionMarkovProposal
-
- ExpressionMarkovProposal(String, Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionMarkovProposal
-
- ExpressionModel - class org.omegahat.Simulation.MCMC.Expressions.ExpressionModel.
-
- ExpressionModel(MultiLineModelFormula, Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionModel
-
- ExpressionModel(String[], Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionModel
-
- ExpressionModel(String, Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionModel
-
- expressions -
Variable in class org.omegahat.Simulation.MCMC.Expressions.ExpressionGibbsSampler
-
- expressions -
Variable in class org.omegahat.Simulation.MCMC.Expressions.ExpressionTarget
-
- expressions() -
Method in class org.omegahat.Simulation.MCMC.Expressions.ExpressionTarget
-
- expressions(List) -
Method in class org.omegahat.Simulation.MCMC.Expressions.ExpressionTarget
-
- ExpressionTarget - class org.omegahat.Simulation.MCMC.Expressions.ExpressionTarget.
-
- ExpressionTarget(MultiLineModelFormula, Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionTarget
-
- ExpressionTarget(String[], Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionTarget
-
- ExpressionTarget(String, Database) -
Constructor for class org.omegahat.Simulation.MCMC.Expressions.ExpressionTarget
-
howmany
points to state
which
using distance method conditionals
GeneralProposal
interface by
adding methods appropriate for generating states for a
HastingsCoupledSampler
.GeneralProposal
.step
s.
step
s.
RecordingIndexEvents when one is recieved.- PlottingListener(String[]) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.PlottingListener
-
- PlottingListener(String[], int) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.PlottingListener
-
- plotWindows -
Variable in class org.omegahat.Simulation.MCMC.Listeners.PlottingListener
-
- plotWindows() -
Method in class org.omegahat.Simulation.MCMC.Listeners.PlottingListener
-
- pmax -
Static variable in class org.omegahat.Probability.Distributions.DistributionFunctions
-
- pmin -
Static variable in class org.omegahat.Probability.Distributions.DistributionFunctions
-
- poissonCDF(int, double) -
Method in class org.omegahat.Probability.Distributions.DistributionFunctions
-
- poissonPMF(int, double) -
Method in class org.omegahat.Probability.Distributions.DistributionFunctions
-
- poissonQuantile(double, double) -
Method in class org.omegahat.Probability.Distributions.DistributionFunctions
-
- poissonRand(double) -
Method in class org.omegahat.Probability.Distributions.DistributionFunctions
- Poisson random generator from Numerical Recipes
- pool -
Static variable in class org.omegahat.Simulation.RandomGenerators.CollingsPRNGConstants
- Pool of (empirically) good multiplicative constants
- PosteriorProbWriter - class org.omegahat.Simulation.MCMC.Listeners.PosteriorProbWriter.
-
- PosteriorProbWriter() -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.PosteriorProbWriter
-
- PosteriorProbWriter(String) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.PosteriorProbWriter
-
- PosteriorProbWriter(String, boolean) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.PosteriorProbWriter
-
- PosteriorProbWriter(String, boolean, boolean) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.PosteriorProbWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.AcceptanceWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.CovarianceWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.HistogramWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.ListenerWriter
-
- print(String) -
Method in interface org.omegahat.Simulation.MCMC.Listeners.MCMCListenerWriter
- Write arbitrary text to the output stream.
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.MeanWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.QuantileWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.ConditionalDistanceWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.ConditionalSquaredDistanceWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.DistanceWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.SquaredDistanceWriter
-
- print(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.PosteriorProbWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.AcceptanceWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.CovarianceWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.HistogramWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.ListenerWriter
-
- println(String) -
Method in interface org.omegahat.Simulation.MCMC.Listeners.MCMCListenerWriter
- Write arbitrary text to the output stream.
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.MeanWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.QuantileWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.ConditionalDistanceWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.ConditionalSquaredDistanceWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.DistanceWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.SquaredDistanceWriter
-
- println(String) -
Method in class org.omegahat.Simulation.MCMC.Listeners.PosteriorProbWriter
-
- prng -
Variable in class org.omegahat.Probability.Distributions.Normal
- Pseudo-Random Number Generator to Use
- prng -
Variable in class org.omegahat.Probability.Distributions.PRNGDistributionFunctions
-
- prng -
Variable in class org.omegahat.Probability.Distributions.MVNormal
- Pseudo-Random Number Generator to Use
- prng -
Variable in class org.omegahat.Simulation.MCMC.Examples.SimpleMetropolisHastingsSampler
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.Examples.SimpleGibbsSampler
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.Examples.SimpleMetropolisSampler
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.Examples.SimpleMarkovChain
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.Proposals.MixtureProposal
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.Proposals.HastingsCoupledMixtureProposal
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.Proposals.AdaptiveProposal
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.Proposals.KernelProposal
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.Proposals.AdaptiveMultiKernelProposal
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.Proposals.KernelDirectionSampler
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.CustomMetropolisHastingsSampler
-
- prng -
Variable in class org.omegahat.Simulation.MCMC.CustomHastingsCoupledSampler
- the current state
- PRNG - interface org.omegahat.Simulation.RandomGenerators.PRNG.
- Interface to Pseudo-random number generators.
- PRNGAdministrator - interface org.omegahat.Simulation.RandomGenerators.PRNGAdministrator.
- The administrator interface provides methods to define
successive PRNG's intended to be used in parallel
simulations.
- PRNGAdministratorEvent - class org.omegahat.Simulation.RandomGenerators.PRNGAdministratorEvent.
-
- PRNGAdministratorEvent() -
Constructor for class org.omegahat.Simulation.RandomGenerators.PRNGAdministratorEvent
-
- PRNGAdministratorEvent(PRNGState, PRNGAdministrator) -
Constructor for class org.omegahat.Simulation.RandomGenerators.PRNGAdministratorEvent
-
- PRNGAdministratorListener - interface org.omegahat.Simulation.RandomGenerators.PRNGAdministratorListener.
-
- PRNGDistributionFunctions - class org.omegahat.Probability.Distributions.PRNGDistributionFunctions.
-
- PRNGDistributionFunctions(PRNG) -
Constructor for class org.omegahat.Probability.Distributions.PRNGDistributionFunctions
- Constructor
- PRNGFactory - interface org.omegahat.Simulation.RandomGenerators.PRNGFactory.
- interface for factories that create PRNG's from PRNGStates.
- PRNGIntegerState - interface org.omegahat.Simulation.RandomGenerators.PRNGIntegerState.
- Extends PRNGState to provide methods for obtaining and setting state details
for PRNG's that can represent thier state as a sequence of
ints.
- PRNGName -
Variable in class org.omegahat.Simulation.RandomGenerators.CollingsPRNGState
- Class this State corresponds to.
- PRNGParameters - interface org.omegahat.Simulation.RandomGenerators.PRNGParameters.
-
- PRNGState - interface org.omegahat.Simulation.RandomGenerators.PRNGState.
- Enapsulates all of the state information of a PRNG.
- PRNGStateRegistered(PRNGAdministratorEvent) -
Method in interface org.omegahat.Simulation.RandomGenerators.PRNGAdministratorListener
-
- prob -
Variable in class org.omegahat.Probability.Distributions.Normal
- Pull all the probability functions out of ' package
- prob -
Variable in class org.omegahat.Probability.Distributions.MVNormal
- Pull all the probability functions out of package
- prob -
Variable in class org.omegahat.Simulation.MCMC.Proposals.NormalMetropolisComponentProposal
-
- probability() -
Method in class org.omegahat.Simulation.MCMC.Listeners.Histogram
-
- probAccept -
Variable in class org.omegahat.Simulation.MCMC.DetailChainStepEvent
-
- probCache -
Variable in class org.omegahat.Simulation.MCMC.Targets.CachingTarget
-
- probCache() -
Method in class org.omegahat.Simulation.MCMC.Targets.CachingTarget
-
- proposal -
Variable in class org.omegahat.Simulation.MCMC.Proposals.AdaptiveProposal
-
- proposal -
Variable in class org.omegahat.Simulation.MCMC.Proposals.IndependentHastingsCoupledProposal
-
- proposal -
Variable in class org.omegahat.Simulation.MCMC.CustomMetropolisHastingsSampler
-
- proposal -
Variable in class org.omegahat.Simulation.MCMC.CustomHastingsCoupledSampler
-
- PROPOSAL -
Static variable in class org.omegahat.Simulation.MCMC.Expressions.ModelEvaluator
-
- proposal_probs -
Variable in class org.omegahat.Simulation.MCMC.Proposals.MixtureProposal
-
- proposal_probs -
Variable in class org.omegahat.Simulation.MCMC.Proposals.HastingsCoupledMixtureProposal
-
- proposalDetails -
Variable in class org.omegahat.Simulation.MCMC.DetailedMultiState
-
- ProposalDetails - interface org.omegahat.Simulation.MCMC.ProposalDetails.
-
- proposalDetails() -
Method in class org.omegahat.Simulation.MCMC.DetailedMultiState
-
- proposalDetails(ProposalDetails) -
Method in class org.omegahat.Simulation.MCMC.DetailedMultiState
-
- proposalFreqs -
Variable in class org.omegahat.Simulation.MCMC.Proposals.IteratedProposal
-
- proposalFreqs -
Variable in class org.omegahat.Simulation.MCMC.Proposals.HastingsCoupledIteratedProposal
-
- proposalModel -
Variable in class org.omegahat.Simulation.MCMC.Expressions.ModelEvaluator
-
- proposalModel() -
Method in class org.omegahat.Simulation.MCMC.Expressions.ModelEvaluator
-
- proposalModel(MultiLineModelFormula) -
Method in class org.omegahat.Simulation.MCMC.Expressions.ModelEvaluator
-
- proposals -
Variable in class org.omegahat.Simulation.MCMC.Proposals.IteratedProposal
-
- proposals -
Variable in class org.omegahat.Simulation.MCMC.Proposals.MixtureProposal
-
- proposals -
Variable in class org.omegahat.Simulation.MCMC.Proposals.MultiProposal
-
- proposals -
Variable in class org.omegahat.Simulation.MCMC.Proposals.HastingsCoupledMixtureProposal
-
- proposals -
Variable in class org.omegahat.Simulation.MCMC.Proposals.HastingsCoupledIteratedProposal
-
- proposalVar -
Variable in class org.omegahat.Simulation.MCMC.Proposals.KernelDirectionSampler
-
- proposed -
Variable in class org.omegahat.Simulation.MCMC.CustomMetropolisHastingsSampler
-
- proposed -
Variable in class org.omegahat.Simulation.MCMC.Expressions.ModelEvaluator
-
- proposed -
Variable in class org.omegahat.Simulation.MCMC.DetailChainStepEvent
-
- proposed() -
Method in class org.omegahat.Simulation.MCMC.CustomMetropolisHastingsSampler
-
- proposedComponent -
Variable in class org.omegahat.Simulation.MCMC.DetailHastingsCoupledStepEvent
-
- proposedProb -
Variable in class org.omegahat.Simulation.MCMC.DetailChainStepEvent
-
- PseudoRandomNormalGenerator - interface org.omegahat.Simulation.RandomGenerators.PseudoRandomNormalGenerator.
- Interface definition for classes that generate univariate pseudo-random normals.
- PseudoRandomUnivariateGenerator - interface org.omegahat.Simulation.RandomGenerators.PseudoRandomUnivariateGenerator.
- Pseudo-random variable generators for univariate variables representable by double's.
- PseudoRandomVariableGenerator - interface org.omegahat.Simulation.RandomGenerators.PseudoRandomVariableGenerator.
- Interface to Pseudo-random variable generators.
RecordingStepEvents when one is recieved.- RecordingStepListener() -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.RecordingStepListener
-
- RecordingStepListener(int) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.RecordingStepListener
-
- refreshInterval -
Variable in class org.omegahat.Simulation.MCMC.Listeners.PlottingListener
-
- refreshInterval() -
Method in class org.omegahat.Simulation.MCMC.Listeners.PlottingListener
-
- refreshInterval(int) -
Method in class org.omegahat.Simulation.MCMC.Listeners.PlottingListener
-
- registerCorbaServer(String, Object) -
Method in class org.omegahat.Simulation.RandomGenerators.TestServer
-
- registerListener(MCMCListener) -
Method in interface org.omegahat.Simulation.MCMC.NotifyingObject
- Register a listener to be notified of events.
- registerListener(MCMCListener) -
Method in class org.omegahat.Simulation.MCMC.NotifyingMCMCObject
-
- registerListener(MCMCListener) -
Method in class org.omegahat.Simulation.MCMC.Listeners.ThinningProxyListener
-
- registerListener(MCMCListener) -
Method in class org.omegahat.Simulation.MCMC.Listeners.SplittingProxyListener
-
- registerPRNGState() -
Method in class org.omegahat.Simulation.RandomGenerators.CollingsPRNGAdministrator
-
- registerPRNGState() -
Method in interface org.omegahat.Simulation.RandomGenerators.PRNGAdministrator
-
- registerPRNGState(Object) -
Method in class org.omegahat.Simulation.RandomGenerators.CollingsPRNGAdministrator
-
- registerPRNGState(Object) -
Method in interface org.omegahat.Simulation.RandomGenerators.PRNGAdministrator
-
- remove(int) -
Method in class org.omegahat.Simulation.MCMC.MultiState
-
- remove(int) -
Method in class org.omegahat.Simulation.MCMC.MultiDoubleState
-
- removeListener(PRNGAdministratorListener) -
Method in class org.omegahat.Simulation.RandomGenerators.CollingsPRNGAdministrator
-
- removeListener(PRNGAdministratorListener) -
Method in class org.omegahat.Simulation.RandomGenerators.NotifyingPRNG
-
- reset() -
Method in class org.omegahat.Simulation.MCMC.Listeners.AcceptanceWriter
-
- reset() -
Method in class org.omegahat.Simulation.MCMC.Listeners.HistogramWriter
-
- reset() -
Method in class org.omegahat.Simulation.MCMC.Listeners.ListenerPrinter
-
- reset() -
Method in class org.omegahat.Simulation.MCMC.Listeners.MeanWriter
-
- reset() -
Method in class org.omegahat.Simulation.MCMC.Listeners.DistanceListener
-
- reset() -
Method in class org.omegahat.Simulation.MCMC.Listeners.CovarianceListener
-
- reset() -
Method in interface org.omegahat.Simulation.MCMC.Listeners.ResettableListener
- Reset any stored state to the initial condition
- resetCounters() -
Method in class org.omegahat.Simulation.MCMC.CustomMetropolisHastingsSampler
-
- resetNumAccepted() -
Method in class org.omegahat.Simulation.MCMC.CustomHastingsCoupledSampler
-
- resetNumProposed() -
Method in class org.omegahat.Simulation.MCMC.CustomHastingsCoupledSampler
-
- ResettableListener - interface org.omegahat.Simulation.MCMC.Listeners.ResettableListener.
- This interface indicates that the listener has some stored state
that can be reset by calling the notify() method.
- resetTime() -
Method in class org.omegahat.Simulation.MCMC.Proposals.IteratedProposal
-
- resetTime() -
Method in class org.omegahat.Simulation.MCMC.Proposals.MixtureProposal
- Reset time to 0
- resetTime() -
Method in interface org.omegahat.Simulation.MCMC.Proposals.TimeDependentProposal
- Reset time to 0
- resetTime() -
Method in class org.omegahat.Simulation.MCMC.Proposals.IndependentHastingsCoupledProposal
-
- resetTime() -
Method in class org.omegahat.Simulation.MCMC.Proposals.NormalMetropolisComponentProposal
-
- resetTime() -
Method in class org.omegahat.Simulation.MCMC.Proposals.HastingsCoupledIteratedProposal
-
- resetTotalEvents() -
Method in class org.omegahat.Simulation.MCMC.Listeners.ThinningProxyListener
-
- returnsLogLikelihood -
Variable in class org.omegahat.Simulation.MCMC.Targets.PipeLikelihood
-
- returnsLogLikelihood() -
Method in class org.omegahat.Simulation.MCMC.Targets.PipeLikelihood
-
- reverseProb -
Variable in class org.omegahat.Simulation.MCMC.DetailChainStepEvent
-
- rho -
Variable in class org.omegahat.Simulation.MCMC.Examples.SimpleMetropolisHastingsSampler
-
- rho -
Variable in class org.omegahat.Simulation.MCMC.Examples.SimpleGibbsSampler
-
- rho -
Variable in class org.omegahat.Simulation.MCMC.Examples.SimpleMetropolisSampler
-
- rho -
Variable in class org.omegahat.Simulation.MCMC.Targets.BivariateNormalDensity
-
- RHSarguments -
Variable in class org.omegahat.Simulation.MCMC.Expressions.ExpressionGeneralProposal
-
- rnorm() -
Method in class org.omegahat.Probability.Distributions.MVNormal
-
- run() -
Method in class org.omegahat.Simulation.MCMC.BaseMarkovChain
-
- run() -
Method in class org.omegahat.Simulation.RandomGenerators.NotifyingPRNG
-
PRNGIntegerState
.
MCMCListener
that only
forwards 1 out of every thinningFactor
events to its
subscribersChainStepEvents when one is recieved.- StepListenerPrinter() -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.StepListenerPrinter
-
- storeTime -
Variable in class org.omegahat.Simulation.MCMC.Listeners.AcceptanceWriter
-
- storeTime -
Variable in class org.omegahat.Simulation.MCMC.Listeners.CovarianceWriter
-
- storeTime -
Variable in class org.omegahat.Simulation.MCMC.Listeners.HistogramWriter
-
- storeTime -
Variable in class org.omegahat.Simulation.MCMC.Listeners.ListenerWriter
-
- storeTime -
Variable in class org.omegahat.Simulation.MCMC.Listeners.MeanWriter
-
- storeTime -
Variable in class org.omegahat.Simulation.MCMC.Listeners.ConditionalDistanceWriter
-
- storeTime -
Variable in class org.omegahat.Simulation.MCMC.Listeners.ConditionalSquaredDistanceWriter
-
- storeTime -
Variable in class org.omegahat.Simulation.MCMC.Listeners.DistanceWriter
-
- storeTime -
Variable in class org.omegahat.Simulation.MCMC.Listeners.SquaredDistanceWriter
-
- StrippedListenerGzipWriter - class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerGzipWriter.
-
- StrippedListenerGzipWriter(String) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerGzipWriter
-
- StrippedListenerGzipWriter(String, boolean) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerGzipWriter
-
- StrippedListenerGzipWriter(String, boolean, boolean) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerGzipWriter
-
- StrippedListenerWriter - class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerWriter.
-
- StrippedListenerWriter() -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerWriter
-
- StrippedListenerWriter(String) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerWriter
-
- StrippedListenerWriter(String, boolean) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerWriter
-
- StrippedListenerWriter(String, boolean, boolean) -
Constructor for class org.omegahat.Simulation.MCMC.Listeners.StrippedListenerWriter
-
- sumSqrSubsetCache -
Variable in class org.omegahat.Simulation.MCMC.MultiDoubleState
-
- SymmetricProposal - interface org.omegahat.Simulation.MCMC.SymmetricProposal.
- A symmetric proposal distribution generates a new state based only on
information from the current state and has the property that
MCMCListener
that only
forwards 1 out of every thinningFactor
events to its
subscribers
|
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